Amphora nova caledonica var. hungarica Pantocsek, 1905 (original description)
Arachnoidiscus rossicus Pantocsek, 1905 (original description)
Asteromphalus lóczyi Pantocsek, 1903 (original description)
Auricula pethöi (Pantocsek) Pantocsek, 1905 accepted as
Amphiprora pethöi Pantocsek, 1892 (new combination reference)
Auricula striata (Pantocsek) Pantocsek, 1905 accepted as
Amphiprora striata Pantocsek, 1892 (new combination reference)
Dictyoneis hungarica (Pantocsek) Pantocsek, 1905 accepted as
Pseudodictyoneis hungarica Pantocsek, 1892 (new combination reference)
Epithelion J. Pantocsek, 1905 (original description)
Gomphopleura hungarica (Pantocsek) Pantocsek, 1905 accepted as
Berkeleya hungarica Pantocsek, 1889 (new combination reference)
Gomphopleura neogradensis (Pantocsek) Pantocsek, 1905 accepted as
Berkeleya neogradensis Pantocsek, 1892 (new combination reference)
Grammatophora valida Pantocsek, 1905 (original description)
Melosira agria Pantocsek, 1905 (original description)
Navicula entzii Pantocsek, 1905 (original description)
Navicula filiformis Pantocsek, 1905 (original description)
Navicula inscendens Pantocsek, 1905 (original description)
Navicula leonis Pantocsek, 1905 (original description)
Navicula margarita Pantocsek, 1905 (original description)
Navicula neumayeriana Pantocsek, 1905 (original description)
Navicula producta Pantocsek, 1905 (original description)
Navicula pusilla var. fossilis Pantocsek, 1905 (original description)
Pseudomastogloia J. Pantocsek, 1905 (original description)
Pseudomastogloia castracanei (Pantocsek) Pantocsek, 1905 accepted as
Alloioneis castracanei Pantocsek, 1889 (new combination reference)
Rhabdonema taeniatum (Pantocsek) Pantocsek, 1905 (new combination reference)
Rhopalodia budayana (Pantocsek) Pantocsek, 1905 accepted as
Epithemia budayana Pantocsek, 1892 (new combination reference)
Rhopalodia gibba var. boryana (Pantocsek) Pantocsek, 1905 accepted as
Epithemia gibba var. boryana Pantocsek, 1889 (new combination reference)
Rhopalodia incisa (Pantocsek) Pantocsek, 1905 accepted as
Epithemia incisa Pantocsek, 1892 (new combination reference)
Rhopalodia pethoi (Pantocsek) Pantocsek, 1905 accepted as
Epithemia pethoi Pantocsek, 1889 (new combination reference)
Rhopalodia ventricosa var. hungarica (Pantocsek) Pantocsek, 1905 (new combination reference)
Stylobiblium carinatum Pantocsek, 1905 † (original description)
Surirella lanceolatoelliptica Pantocsek, 1905 (original description)
Triceratium antipodum J.Pantocsek, 1892 † accepted as
Entogoniopsis foveata (R.K. Greville) J.Witkowski, P.A.Sims, N.I.Strelnikova & D.M.Williams, 2015 † (original description)
Triceratium armasevskii Pantocsek, 1905 † accepted as
Entogoniopsis armashevskii (J.Pantocsek) J.Witkowski, P.A.Sims, N.I.Strelnikova & D.M.Williams, 2015 † (original description)