Endictya boryana Pantocsek, 1889 (uncertain > unassessed )
Endictya campechiana (Grunow) De Toni, 1894 accepted as Stephanopyxis campechiana Grunow in Schmidt et al., 1881
Endictya cribrosa (Brebisson in W. Smith) Brébisson, 1872 accepted as Melosira cribrosa Brebisson in W. Smith, 1857
Endictya hendeyi Hemphill-Haley in Hemphill-Haley & Mahood, 1997 (uncertain > unassessed )
Endictya hungarica Hajós, 1968 (uncertain > unassessed )
Endictya japonica Kanaya, 1959 (uncertain > unassessed )
Endictya lunyacsekii Pantocsek, 1889 (uncertain > unassessed )
Endictya margaritifera Mann, 1925 (uncertain > unassessed )
Endictya minor Schmidt in Schmidt et al., 1881 (uncertain > unassessed )
Endictya oceania (uncertain > unassessed )
Endictya oceania var. minor (A. Schmidt) Cleve, 1901 accepted as Endictya minor Schmidt in Schmidt et al., 1881
Endictya oceanica Ehrenberg, 1845 (uncertain > unassessed )
Endictya pliocenica Jousé, 1955 (uncertain > unassessed )
Endictya robustus (Greville) Hanna & Grant emend Moreno in Moreno, Licea & Santoyo, 1996 accepted as Coscinodiscus robustus f. robustus Greville, 1866
Endictya robustus (Greville) Hanna & Grant, 1926 accepted as Coscinodiscus robustus f. robustus Greville, 1866
Endictya schmidtii Pantocsek, 1889 (uncertain > unassessed )
Endictya superba Ehrenberg (uncertain > unassessed )
Endictya zabelinae Cleve-Euler in Cleve-Euler & Hessland, 1948 (uncertain > unassessed )